There are a variety of pathway databases such as KEGG, Reactome and Wikipathways. One of my projects involves pathway analysis, and it’d be nice to easily display them. In many cases, one can simply display a pre-generated image of the pathway (such as in KEGG), but in general, interactivity is nice. However, the latter would […]
Plate Well Series Plots in R
Plate well series plots are a common way to summarize well level data across multiple plates in a high throughput screen. An example can be seen in Zhang et al. As I’ve been working with RNAi screens, this visualization has been a useful way to summarize screening data and the various transformations on that data. […]