Today was the final class of the graduate course I taught this semester. What with traveling and job hunting, it wasn’t as thorough as I would’ve liked (really want to cover Hadoop, EC2 etc). In any case, I’ve put up the slides from the class for posterity.
Sometime back I had described some work on the automated annotation of PubChem bioassays. The lack of annotations on the assays can make it difficult to integrate with other biological resources. Ideally, the bioassays would be manually annotated – however, it’s not a very exciting job. So, collaborating with Patrick Ruch and Julien Gobeill, we […]
In my previous post, I had asked whether we really need AtomContainerSet and other related specialized container classes as opposed to using parametrized List objects. Gilleain had mentioned some issues that might require these specialized classes. But at this point it’s not clear to me what the intended goal for these classes was. For now, […]
Based on my previous post, Gilleain had posted an extensive comment on the issues I had raised. I thought it’d be useful to bring those comments to the top level and add some of my own. 1) API Cleanup. I would prefer if all access modifiers were explicit – especially package, since that is the […]
The CDK workshop is coming up at the EBI next week and it’s very frustrating to not be able to attend because of stupid US visa issues. While the workshop is not very long and already has an excellent program, I think it’d be useful to have a discussion on larger and broader issues regarding […]